PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00023.1.g02100.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family G2-like
Protein Properties Length: 756aa    MW: 82992.5 Da    PI: 10.1376
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00023.1.g02100.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like38.42.7e-12715739125
                       G2-like   1 kprlrWtpeLHerFveaveqLGGse 25 
                                   kprlrWtp+LHerFv+av++LGG++
  Zjn_sc00023.1.g02100.1.am.mk 715 KPRLRWTPDLHERFVDAVTKLGGPD 739
                                   79*********************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF509981.26E-56148447IPR011047Quinoprotein alcohol dehydrogenase-like superfamily
CDDcd002001.03E-38162445No hitNo description
PROSITE profilePS5029430.743165454IPR017986WD40-repeat-containing domain
Gene3DG3DSA:2.130.10.101.0E-59165449IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003202.6E-5183222IPR001680WD40 repeat
PfamPF128948.7E-6189247IPR024977Anaphase-promoting complex subunit 4, WD40 domain
PROSITE profilePS5008212.012190231IPR001680WD40 repeat
SMARTSM0032011225263IPR001680WD40 repeat
SMARTSM003201.2E-9267306IPR001680WD40 repeat
PfamPF004002.9E-7271306IPR001680WD40 repeat
PROSITE profilePS5008215.154274315IPR001680WD40 repeat
PROSITE patternPS006780293307IPR019775WD40 repeat, conserved site
SMARTSM003200.0029318360IPR001680WD40 repeat
PfamPF004000.028322360IPR001680WD40 repeat
PROSITE patternPS006780347361IPR019775WD40 repeat, conserved site
SMARTSM00320410363403IPR001680WD40 repeat
SMARTSM003205.4E-5406445IPR001680WD40 repeat
PfamPF004000.049412445IPR001680WD40 repeat
PROSITE profilePS5008212.681413446IPR001680WD40 repeat
Gene3DG3DSA:1.10.10.601.2E-10712740IPR009057Homeodomain-like
TIGRFAMsTIGR015571.5E-7715740IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 756 aa     Download sequence    Send to blast
MDPGSKSISS QKSSRRMAPR PPLQEAGSRP YMPSLCSGPR NPSAKCYGDR FIPDRSAMDM  60
DMAHYLLTEP KKGKENPAAS PAKEAYRKLL AEKLLNNRTR ILAFRNKPPE PDNILADLRA  120
DAASFQAKPV KQRRHIPQSA DRTLDAPELV DDYYLNLLDW GSNNVLSIAL GNTVYLWDAN  180
SGSTSELVTI DEDNGPVTSV SWAPDGRHIA VGLNSSDIQL WDSTSNRLLR TMRGVHEWRV  240
GSLAWNNHIL TTGGMDGKIV NNDVRIRNHV VHTYRGHEQE VCGLKWSGSG QQLASGGNDN  300
LLHIWDVSMA SSVQSAGRTQ WLHRLPDHLA AVKALAWCPF QSNLLASGGG GGDRCIKFWN  360
THTGACLNSV DTGSQVCALL WNKNERELLS SHGFTQNQLT LWKYPSMVKM ADLNGHTSRV  420
LFMAQSPDGY TVASAAADET LRFWSVFGTP EPTPKASKAS SYTGIFNTSG AAVSTQQVAR  480
GNSWREYSSA ISAEHFAHWH RGGTSPGCRV ARDLPNNTVL VGSSFRRGGK PMCDFAACAV  540
FSLSVRQAST QPPNAARDTS TVRGVRTQPS SCCPKERRRE IPHTHDALHL LRRSLRWSAL  600
QLLSPPPFSF LSSLHTYIRL RSHCTRTAHA DRPPRLSTGA SGQRNIPCVG LQQEPVRSSH  660
STGEGLRGRR RGDRRGEVGA RVQLSSARWL TSCRGGKGMQ GTYGGGMGAL SRDPKPRLRW  720
TPDLHERFVD AVTKLGGPDS LAQLVSHCKS DHRALC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ggd_B1e-122484478405Cell division cycle protein 20 homolog
4ggd_A1e-122484478405Cell division cycle protein 20 homolog
5g04_R1e-1224844776473CELL DIVISION CYCLE PROTEIN 20 HOMOLOG
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015691685.10.0PREDICTED: cell division cycle 20.2, cofactor of APC complex-like
SwissprotQ9SZA40.0CDC21_ARATH; Cell division cycle 20.1, cofactor of APC complex
TrEMBLJ3M1180.0J3M118_ORYBR; Uncharacterized protein
STRINGOB04G30930.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13640.11e-11G2-like family protein